module graphhelper.linkage

Short summary

module pyensae.graphhelper.linkage

dendogram, heatmap functionalities.

It comes from linkage.py which I copied here because the module does not properly work on Python 3 (import issues). See also biokit license.

author:

Thomas Cokelaer

source on GitHub

Classes

class	truncated documentation
Linkage	Linkage used in other tools such as Heatmap, the class requires scipy.

Methods

method	truncated documentation
__init__	unused
linkage	Mostly calls linkage. …

Documentation

dendogram, heatmap functionalities.

It comes from linkage.py which I copied here because the module does not properly work on Python 3 (import issues). See also biokit license.

author:

Thomas Cokelaer

source on GitHub

class pyensae.graphhelper.linkage.Linkage

Bases: object

Linkage used in other tools such as Heatmap, the class requires scipy.

source on GitHub

unused

source on GitHub

__init__()

unused

source on GitHub

linkage(df, method, metric)

Mostly calls linkage.

Parameters:

• df – dataframe

• method –

  see linkage

• metric –

  see linkage

Returns:

output of linkage

source on GitHub